Applications

CentOS 7

  1. Compiling STAR 2.7 with Intel Compiler 2018 on CentOS 7
  2. Compiling with NWChem-6.8 with Intel MPI 2018u3
  3. Compile gdal-2.4.3 on CentOS 7
  4. Compiling BoltzTraP-1.2.5 with GNU
  5. Compile StringTie on CentOS 7.6
  6. Installing SAMtools on CentOS 7
  7. Compiling tesseract-5.0 on CentOS 7
  8. Installing SPECFEM3d with GNU and OpenMPI
  9. Compiling Quantum ESPRESSO-6.5.0 with Intel MPI 2018 on CentOS 7
  10. Compiling OpenFOAM-7 with Third-Party-7 with Intel MPI on CentOS 7
  11. Setting up NBO-7 with Gaussian-16a
  12. Compiling Scalapack-2.0.2 on CentOS 7

CentOS 5/6

  1. Installing Gromacs 4.0.7 on CentOS 5
  2. Compiling Gromacs 5.0.4 on CentOS 6
  3. Installing NWChem 6 with OpenMPI, Intel Compilers and Intel MKL on CentOS 5
  4. Installing NWChem 5 with OpenMPI, Intel Compilers and MKL and CentOS 5.x
  5. Building the GAMESS with Intel® Compilers, Intel® MKL and OpenMPI on Linux
  6. Linux Binary Gaussian 09 Installation Instructions
  7. Compiling adaptive Poisson-Boltzmann Solver (APBS) on CentOS 5
  8. Compiling AMBER 10 with Intel XE Compiler and Intel MKL 10
  9. Installing ALPS 2.0 from source on CentOS 5
  10. Compiling and Installing GAP System for Computational Discrete Algebra
  11. Compiling and Installing Gromacs 4.6.2 with OpenMPI and Intel on CentOS 6
  12. Compiling VASP 5.3.3 with OpenMPI 1.6.5 and Intel 12.1.5
  13. Compiling and Installing Meep-1.2.1 on CentOS 6 and OpenMPI
  14. Installing HTseq for python 26 for CentOS 6
  15. Compiling SQLite 3.8.1 on CentOS 5
  16. Compiling gnuplot 4.6.4 on CentOS 5
  17. Compiling Java 7 on CentOS 5 and 6
  18. Compling ANTLR 2.7.7 on CentOS 6
  19. Compiling GSL/4.1 from GIT on CentOS 5
  20. Installing and Compiling Mankai Common Lisp on CentOS 5
  21. Compiling udunits-2.1.24 on CentOS 6
  22. Basic Configuration of Octopus 4.1.2 with OpenMPI on CentOS 6
  23. Basic Configuration of Octopus 5.0.0 with OpenMPI on CentOS 6
  24. Installing Berkeley UPC on CentOS 6 and GNU-4.8
  25. Compiling LAMMPS-7Dec2015 with OpenMPI and GNU
  26. Compiling LIGGGHTS with OpenMPI
  27. Compiling LAMMPS-14May16 with Intel-15.0.6 and Intel-MPI-5.0.3
  28. Compiling and Installing mfix-2016.1
  29. Compiling Quantum ESPRESSO-2.4.0 with Intel Parallel Studio 2016 on CentOS 6
  30. Compiling FDS-SMV with Intel MPI-5.0.3 on CentOS 6
  31. Compiling CPMD-3.17.1 with intel-13.0.1.117 and OpenMPI-1.8.3
  32. Compiling NAMD-2.11 with Intel 2013-SP1 and iMPI 4.1.3 and FFTW-2.1.5
  33. Compiling CPMD-3.17.1 with Intel-13.0.1.117 and iMPI-14.0.2
  34. Compiling Relion with Intel Compilers-15.0.6 and Intel MPI-5.0.3
  35. Compiling HDF5-1.8.17 with Intel-15.0.6 and Intel-MPI-5.0.6
  36. Compiling MEEP with Intel-15.0.6, Intel-MPI 5.0.3 and HDFT-1.8.17
  37. LAMMPS Tools and Packmol with Intel Fortran
  38. Compiling VASP-5.2.12 with Intel MPI-5.0.3
  39. Compiling SWIG-3.0.12 on CentOS 6
  40. Compiling with NWChem-6.6 with Intel MPI-5.0.3
  41. Installing OpenCV on CentOS 6 on yum
  42. Compiling VTST Tools with VASP-5.3.5
  43. Compiling Wannier90-2.1.0 with Intel-MPI 5.1.3
  44. Compiling VASP-5.4.4 with Intel MPI-5.0.3
  45. Compiling OpenFOAM-5.0 with Intel-MPI

Anaconda, Python and related libraries:

  1. Installing and Compiling Python 2.7.8 on CentOS 5
  2. Compiling the python-igraph with Python 2.7 on CentOS 5
  3. Using pip to install python packages
  4. Compiling and Configuring Python 3.4.1 on CentOS
  5. Installing scipy and other scientific packages using pip3 for Python 3.4.1
  6. Dependencies for pillow module for python-3 on CentOS 6
  7. Compile zlib-1.2.8 with Intel-15.0.6
  8. Installing Scikit-Learn on python-3.4 with CentOS 6
  9. Understanding Conda and Pip
  10. Conda versus pip virtualenv commands
  11. Installing conda packages locally in own directory
  12. Good Information on basic Python Errors
  13. Solving environment: failed with initial frozen solve. Retrying with flexible solve
  14. Can’t execute `conda activate` from bash script

X-Windows

  1. Installing Grace (xmgrace) on CentOS 5 and 6

Other Applications

  1. Installing dokuwiki on CentOS 6
  2. Installing and Configuring GIT on CentOS 5

MATLAB

  1. Managing MATLAB Users using MLM options for FlexLM
  2. Increasing JavaMemHeapMax for MATLAB on CentOS
  3. Testing for license checkout for MATLAB_Distrib_Comp_Engine

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