HPC Toolkits

Benchmarking

  1. Testing the Infiniband Interconnect Performance with Intel MPI Benchmark (Part I)
  2. Testing the Infiniband Interconnect Performance with Intel MPI Benchmark (Part II)
  3. Using iperf to measure the bandwidth and quality of network
  4. OFED Performance Micro-Benchmark Latency Test
  5. Running Linpack (HPL) Test on Linux Cluster with OpenMPI and Intel Compilers
  6. Compiling Open Tool for Parameter Optimization (otpo)

High Performance Computing versus Machine Learning

  1. Difference between HPC Computation and Machine Learning

Monitoring

  1. Installing and configuring Ganglia on CentOS 5.4
  2. Installing and configuring Ganglia on CentOS 5.8

Parallel Distribution Scripts

  1. Installing pdsh to issue commands to a group of nodes in parallel in CentOS

PBS Scripts

  1. Sample PBS Scripts for MATLAB
  2. Sample PBS Scripts for R
  3. Running multiple copies of the same job at the same time on PBS
  4. Handling input files on PBS
  5. Sequential execution of the Parallel or serial jobs on OpenPBS / Torque
  6. PBS scripts for mpirun parameters for Chelsio Cards

Security

  1. Using pam_pbssimpleauth.so to authorise login for users for Torque

XCAT

  1. Basic xCAT installation
  2. Dependency issues when installing xCAT 2.7 on CentOS 5
  3. Dependency issues when installing xCAT 2.7 on CentOS 6
  4. Error when installing xCAT 2.8.2
  5. Changing Hostname in xCAT 2.14