by

Compiling STAR 2.7 with Intel Compiler 2018 on CentOS 7


What is STAR 2.7?
Spliced Transcripts Alignment to a Reference
https://www.ncbi.nlm.nih.gov/pubmed/23104886


Hardware/Software Requirements
x86-64 compatible processors


Manual
https://github.com/alexdobin/STAR/blob/master/doc/STARmanual.pdf


Compiling for Source
# Source Intel Compilers

source /usr/local/intel/2018u3/bin/compilervars.sh intel64
source /usr/local/intel/2018u3/impi/2018.3.222/bin64/mpivars.sh intel64
source /usr/local/intel/2018u3/mkl/bin/mklvars.sh intel64
source /usr/local/intel/2018u3/parallel_studio_xe_2018/bin/psxevars.sh intel64
MKLROOT=/usr/local/intel/2018u3/mkl
# wget https://github.com/alexdobin/STAR/archive/2.7.1a.tar.gz
# tar -xvzf 2.7.1a.tar.gz
# cd STAR-2.7.1a/source
# mkdir /usr/local/STAR-2.7.1a
# cp STAR /usr/local/STAR-2.7.1a/
# cp STARlong /usr/local/STAR-2.7.1a/
# cp -r htslib /usr/local/STAR-2.7.1a/

Leave a Reply

Fill in your details below or click an icon to log in:

Gravatar
WordPress.com Logo

You are commenting using your WordPress.com account. ( Log Out /  Change )

Google photo

You are commenting using your Google account. ( Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. ( Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. ( Log Out /  Change )

Cancel

Connecting to %s

This site uses Akismet to reduce spam. Learn how your comment data is processed.