PLUMED is a plugin that works with a large number of molecular dynamics codes (Codes interfaced with PLUMED ). It can be used to analyze features of the dynamics on-the-fly or to perform a wide variety of free energy methods. PLUMED can also work as a Command Line Tools to perform analysis on trajectories saved in most of the existing formats.
ANTS is a tool for computational neuroanatomy based on medical images. ANTS reads any image type that can be read by ITK (www.itk.org), that is, jpg, tiff, hdr, nii, nii.gz, mha/d and more image types as well. For the most part, ANTS will output float images which you can convert to other types with the ANTS ConvertImagePixelType tool. ImageMath has a bunch of basic utilities such as multiplication, inversion and many more advanced tools such as computation of the Lipschitz norm of a deformation field. ANTS programs may be called from the command line on almost any platform.
Various processors and pieces of code are often compared to brains, but neuromorphic chips work to much more directly mimic neurological systems through the use of computational “neurons” that communicate with one another. Intel’s first-generation Loihi chip, introduced in 2017, has around 128,000 of those digital neurons. Over the ensuing four years, Loihi has been packed into increasingly large systems, learned to touch and even been taught to smell.
Now, it’s getting a new family member: Loihi 2. In its press release, Intel said that years of testing with the first-generation Loihi chip helped them to design a second generation with up to ten times the processing speed; up to 15 times greater resource density; and up to a million computational neurons per chip – more than seven times those in the first generation. Intel reports that early tests have shown that Loihi 2 required more than 60 times fewer ops per inference when running deep neural networks as compared to Loihi 1 (without a loss in accuracy).
CMake is an open-source, cross-platform family of tools designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configuration files, and generate native makefiles and workspaces that can be used in the compiler environment of your choice.
Step 1: You can use the bootstrap which will default the cmake to default location ie /usr/local/. If you are using bootstrap,
# tar -zxvf cmake-3.21.3.tar.gz
# cd cmake-3.21.3
# make install
CMake 3.21.3, Copyright 2000-2021 Kitware, Inc. and Contributors
Found GNU toolchain
C compiler on this system is: gcc
C++ compiler on this system is: g++ -std=gnu++1y
Makefile processor on this system is: gmake
g++ has setenv
g++ has unsetenv
g++ does not have environ in stdlib.h
g++ has stl wstring
g++ has <ext/stdio_filebuf.h>
gmake: Warning: File `Makefile' has modification time 0.15 s in the future
gmake: `cmake' is up to date.
gmake: warning: Clock skew detected. Your build may be incomplete.
loading initial cache file /myhome/melvin/Downloads/cmake-3.21.3/Bootstrap.cmk/InitialCacheFlags.cmake
CMake Error at CMakeLists.txt:107 (message):
The C++ compiler does not support C++11 (e.g. std::unique_ptr).
-- Configuring incomplete, errors occurred!
See also "/myhome/melvin/Downloads/cmake-3.21.3/CMakeFiles/CMakeOutput.log".
See also "/myhome/melvin/Downloads/cmake-3.21.3/CMakeFiles/CMakeError.log".
Step 1: You may want to export this before compiling
Step 2: You might want to move to an unmounted directory like /root and try compiling again with root access.
Alternatively, instead of using ./boostrap, you can use the traditional configure command
# make install
The I_MPI_DEBUG environment variable provides a convenient way to get detailed information about an MPI application at runtime. You can set the variable value from 0 (the default value) to 1000. The higher the value, the more debug information you get.
High values of I_MPI_DEBUG can output a lot of information and significantly reduce performance of your application. A value of I_MPI_DEBUG=5 is generally a good starting point, which provides sufficient information to find common errors.